Hello Breman, A list of alignment tools that directly output SAM output is available here: http://samtools.sourceforge.net/swlist.shtml
We hope this resource is helpful to you, Jennifer jackson ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Bremen Braun" <[email protected]> wrote: > From: "Bremen Braun" <[email protected]> > To: [email protected] > Sent: Friday, January 15, 2010 9:16:42 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] Alignment tools question > > Hello, > I am wondering if Blat is recommended for my situation. I am hoping > to > display backend sequences mapped against genomic sequences and to view > the > differences using SAM. What comparison tool would you recommend? I see > as of > yet samtools doesn't convert psl to sam but there is a low priority > open > task to do so. The task difficulty has been described as easy, so > surely > there's someone that has already performed this task? > > Thanks, > Bremen Braun > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
