Hello, Using the dbSNP track controls or the primary table itself, Coding - Synonymous and Coding - Non-Synonymous is an annotated for some of the data in this location:
snp130.func http://genome.ucsc.edu/FAQ/FAQdownloads#download1 http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html You can also take any transcript (full or coding only), swap in the variation, and use this tool to do a translation: http://genome.ucsc.edu/ -> Utilities (left blue navigation bar) -> DNA Duster http://users.soe.ucsc.edu/~kent/dnaDust/dnadust.html Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Archie Russell" <[email protected]> wrote: > From: "Archie Russell" <[email protected]> > To: [email protected] > Sent: Friday, January 29, 2010 10:50:06 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] snp->protein change > > Hi guys > > If I zoom in close enough using the browser I see there are amino > acid > residues for each gene, is there a tool or suggested method to > determine > how a particular SNP effects these residues? > > Thanks > Archie > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
