Hello again, We have another table/file to suggest:
snp130CodingDbSnp -- it has more detailed functional annotations provided by dbSNP Thanks, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Jennifer Jackson" <[email protected]> wrote: > From: "Jennifer Jackson" <[email protected]> > To: "Archie Russell" <[email protected]> > Cc: [email protected] > Sent: Friday, January 29, 2010 11:05:33 AM GMT -08:00 US/Canada Pacific > Subject: Re: [Genome] snp->protein change > > Hello, > > Using the dbSNP track controls or the primary table itself, > Coding - Synonymous and Coding - Non-Synonymous > is an annotated for some of the data in this location: > > snp130.func > > http://genome.ucsc.edu/FAQ/FAQdownloads#download1 > http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html > > You can also take any transcript (full or coding only), > swap in the variation, and use this tool to do a translation: > http://genome.ucsc.edu/ -> Utilities (left blue navigation bar) -> DNA > Duster > http://users.soe.ucsc.edu/~kent/dnaDust/dnadust.html > > Jennifer > > ------------------------------------------------ > Jennifer Jackson > UCSC Genome Bioinformatics Group > > ----- "Archie Russell" <[email protected]> wrote: > > > From: "Archie Russell" <[email protected]> > > To: [email protected] > > Sent: Friday, January 29, 2010 10:50:06 AM GMT -08:00 US/Canada > Pacific > > Subject: [Genome] snp->protein change > > > > Hi guys > > > > If I zoom in close enough using the browser I see there are amino > > acid > > residues for each gene, is there a tool or suggested method to > > determine > > how a particular SNP effects these residues? > > > > Thanks > > Archie > > _______________________________________________ > > Genome maillist - [email protected] > > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
