Hello Nicolas, When you state that the visibility option does not work in the track line from the .bed file, it is difficult to understand what you mean. Are you having problems using the Custom track submission tool?
For .bigBED format - the transformation of the .BED file into .bigBED should be the data only, do not include the browser and track lines. Then, when submitted, include the browser and track lines (including visibility and bigDataUrl) in the form. http://genome.ucsc.edu/goldenPath/help/bigBed.html If you continue to have problems, please let us know and we can set up to examine a sample of your data. Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Nicolas Servant" <[email protected]> wrote: > From: "Nicolas Servant" <[email protected]> > To: [email protected] > Sent: Friday, February 5, 2010 5:11:48 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] bug report BigBED format > > Hello, > > I just want to report a problem with the bigBED format. > The "visibility" option of the track do not work. Not only in the > track > line from the .bed file, but also in the interface. > Even if I try to change this option, it doesn't work. > > On the contrary, it works if I load the entire BED file instead of > the > bigBED ... > > Regards > Nicolas Servant > > > > -- > Nicolas Servant > Equipe Bioinformatique > Institut Curie > 26, rue d'Ulm - 75248 Paris Cedex 05 - FRANCE > > Email: [email protected] > Tel: 01 56 24 69 85 > http://bioinfo.curie.fr/ > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
