Hello Jennifer, Thanks for your answer. Actually, this is because I have a lot of data. I used the UCSC browser and the bigBED format to display high throughput sequencing data, and when I have too many reads in a region, the "dense" visualization is the only one available ... the others don't work. I just have to zoom in to be able to use others visualization ...
Thanks ! Nicolas Jennifer Jackson a écrit : > Hello Nicolas, > > When you state that the visibility option does not work in the track line > from the .bed file, it is difficult to understand what you mean. Are you > having problems using the Custom track submission tool? > > For .bigBED format - the transformation of the .BED file into .bigBED should > be the data only, do not include the browser and track lines. Then, when > submitted, include the browser and track lines (including visibility and > bigDataUrl) in the form. > > http://genome.ucsc.edu/goldenPath/help/bigBed.html > > If you continue to have problems, please let us know and we can set up to > examine a sample of your data. > > Jennifer > > > ------------------------------------------------ > Jennifer Jackson > UCSC Genome Bioinformatics Group > > ----- "Nicolas Servant" <[email protected]> wrote: > > >> From: "Nicolas Servant" <[email protected]> >> To: [email protected] >> Sent: Friday, February 5, 2010 5:11:48 AM GMT -08:00 US/Canada Pacific >> Subject: [Genome] bug report BigBED format >> >> Hello, >> >> I just want to report a problem with the bigBED format. >> The "visibility" option of the track do not work. Not only in the >> track >> line from the .bed file, but also in the interface. >> Even if I try to change this option, it doesn't work. >> >> On the contrary, it works if I load the entire BED file instead of >> the >> bigBED ... >> >> Regards >> Nicolas Servant >> >> >> >> -- >> Nicolas Servant >> Equipe Bioinformatique >> Institut Curie >> 26, rue d'Ulm - 75248 Paris Cedex 05 - FRANCE >> >> Email: [email protected] >> Tel: 01 56 24 69 85 >> http://bioinfo.curie.fr/ >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
