Hello again, The liftOver file from WS180 (ce5) to WS190 (ce6) is available now on the main downloads server.
File name: ce5ToCe6.over.chain.gz Location (with ftp/rsync instructions) http://hgdownload.cse.ucsc.edu/goldenPath/ce6/liftOver/ Glad we could help, Jennifer On 2/17/10 6:47 PM, Jennifer Jackson wrote: > Hi Andrew, > > We are working out the details about how make the data available to you. > Give us a few days and if you don't hear back, please send an email for > a follow-up. > > Meanwhile, you are welcome to use the test server at > http://genome-test.cse.ucsc.edu. > > The assembly WS180 (ce5) is there as well as liftOver functionality in > the web tool version for the genome assemblies you mention (WS170=ce4 > and WS190=ce6). > http://genome-test.cse.ucsc.edu/cgi-bin/hgLiftOver > > Please remember that data on the test server has not undergone QA and > may change over time as it is often used for internal projects only. > > Thanks, > Jennifer > > --------------------------------- > Jennifer Jackson > UCSC Genome Bioinformatics Group > http://genome.ucsc.edu/ > > On 2/17/10 2:06 PM, Andrew Oler wrote: >> Hi, >> >> >> >> I have some data produced in the WS180 genome of C elegans and I would >> like it converted to the WS190 (or WS170) genome. It looks like only >> the WS170 and WS190 genomes are present on the genome browser and >> available for Liftover. Would it be possible to create an over.chain >> file so I can use the command-line version of LiftOver to do my >> analyses? >> >> >> >> Thanks, >> >> >> >> Andrew >> >> >> >> Brad Cairns Lab >> Huntsman Cancer Institute Room #4350 >> University of Utah >> 2000 Circle of Hope >> Salt Lake City, UT 84112 >> >> >> >> (801) 585-1823 >> >> >> >> >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
