Hello Nicholas, For a single region, there are two quick methods:
1) From the gateway page or from the in the assembly D.melanogaster/Apr.2006/dm3, enter in the positional coordinates and submit. Next, use the "DNA" button in the top blue navigation bar. This will take you to a page where you can specify how the output should be formatted. 2) Using the Table browser, set the clade/genome/assembly for D.melanogaster/Apr.2006. Set group=Mapping and sequencing tracks and track=Assembly. The default table will be "gold". Next enter the positional coordinates into the region filter box (here, you could also enter multiple positions by pasting or uploading a file of coordinates). Then set the output=sequence. Name the file for download and submit. This will take you to a page where you can also specify how the output should be formatted. For multiple regions, this link provides help: http://genome.ucsc.edu/FAQ/FAQdownloads.html#download32 Table browser user guide: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html Thanks, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Bioinformatics Group http://genome.ucsc.edu/ On 2/22/10 8:14 AM, Nicholas Price wrote: > Hi > > If I want to extract the following sequence from the D.melanogaster genome > and have the output format in Fasta format.. how would I do it?? > > chr2L:19569490-19569561 > > Can you please explain me exactly which options from the table browser will > I have to use?? > > Thank you > > Nicholas > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
