I want to compile a list of conserved protein coding transcripts(/genes)
between mouse (mm9 <http://genome.ucsc.edu/cgi-bin/hgGateway?db=mm9>) and
human(hg19) that are involved with DNA repair. Basically I want the table
with names next to aligned sequences of the transcripts. I have the names
and accession numbers of around 300 human genes that I am interested in, and
now I want to find the sequences of their mouse homologous. GBrowser appears
to do so in some extend, though only gene by gene and graphically. I have
the required computational skills required to install the database and
manage scripts, though I do not know where to start and what tools to use,
so therefor the question: what tools can I use to build this DB?
Greetings,
Hernando Sanchez
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