Hi, after I installed the most current Kent's source jksrc.v225.zip on my GB mirror (hg18 only), I am getting a lot of errors while rebuilding hg18.trackDB from the corresponding trackDb.ra files:
Error: 'wgEncodeUwDGF' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeUwChIPSeq' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeGisPet' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeSunyalbanyRnaGeneChip' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeCshlShortRnaSeq' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeRikenCage' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeHudsonalphaChipSeq' missing shortLabels or sortOrder setting is inconsistent. Error: 'barskiChIPseq' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeHudsonalphaRnaSeq' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeHudsonalphaCnv' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeUmasshaTfbsValid' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeChromatinMap' missing shortLabels or sortOrder setting is inconsistent. Error: 'zhaoLabNucleosome' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeCshlLongRnaSeq' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeCaltechRnaSeq' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeMapability' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeBroadChipSeq' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeGisDnaPet' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeAffyRnaChip' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeGisRnaSeq' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeUwDnaseSeq' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeNhgriNre' missing shortLabels or sortOrder setting is inconsistent. Error: 'wgEncodeYaleChIPseq' missing shortLabels or sortOrder setting is inconsistent. followed by 2000+ "parent X missing for subtrack Y" messages. Is it because those the new .ra files are broken, or I am doing something wrong? Thanks Ivan _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
