Hello Ivan,
One of our developers suggests that you change that line to:
safef(previous, sizeof(previous), "%s", row[0]);
then recompile. Be sure to let us know if this does not fix the problem.
In the future, please send emails specific to your mirror site to this mailing
list: [email protected].
Regards,
----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu
Smirnov, Ivan wrote:
> When I try to make new src (v225) it breaks with:
>
> hgSuggest.c: In function 'main':
> hgSuggest.c:74: error: format not a string literal and no format arguments
> make[1]: *** [hgSuggest.o] Error 1
> make[1]: Leaving directory `/home/ivan/setupGB/kent/src/hg/hgSuggest'
> make: *** [hgSuggest.bins] Error 2
>
> I am running Ubuntu server 9.04, gcc version 4.3.3
>
> Any ideas?
>
> Thanks
> Ivan
>
> ________________________________________
> From: Jennifer Jackson [[email protected]]
> Sent: Tuesday, March 02, 2010 4:26 PM
> To: Smirnov, Ivan
> Cc: [email protected]
> Subject: Re: [Genome] hgTrackDb errors
>
> Hello,
>
> There have been some changes that need to be put into place for your
> mirror to function correctly. Specifically, hgTrackDb and tdbQuery need
> to be updated. Both are called when you do a make in the trackDb directory.
>
> https://lists.soe.ucsc.edu/pipermail/genome-mirror/2010-February/001584.html
> https://lists.soe.ucsc.edu/pipermail/genome-mirror/2010-February/001599.html
>
> ---------------------------------
> Jennifer Jackson
> UCSC Genome Bioinformatics Group
> http://genome.ucsc.edu/
>
> On 3/2/10 12:41 PM, Smirnov, Ivan wrote:
>> Hi,
>>
>> after I installed the most current Kent's source jksrc.v225.zip on my GB
>> mirror (hg18 only), I am getting a lot of errors while rebuilding
>> hg18.trackDB from the corresponding trackDb.ra files:
>>
>> Error: 'wgEncodeUwDGF' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeUwChIPSeq' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeGisPet' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeSunyalbanyRnaGeneChip' missing shortLabels or sortOrder
>> setting is inconsistent.
>> Error: 'wgEncodeCshlShortRnaSeq' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeRikenCage' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeHudsonalphaChipSeq' missing shortLabels or sortOrder setting
>> is inconsistent.
>> Error: 'barskiChIPseq' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeHudsonalphaRnaSeq' missing shortLabels or sortOrder setting
>> is inconsistent.
>> Error: 'wgEncodeHudsonalphaCnv' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeUmasshaTfbsValid' missing shortLabels or sortOrder setting
>> is inconsistent.
>> Error: 'wgEncodeChromatinMap' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'zhaoLabNucleosome' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeCshlLongRnaSeq' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeCaltechRnaSeq' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeMapability' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeBroadChipSeq' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeGisDnaPet' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeAffyRnaChip' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeGisRnaSeq' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeUwDnaseSeq' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeNhgriNre' missing shortLabels or sortOrder setting is
>> inconsistent.
>> Error: 'wgEncodeYaleChIPseq' missing shortLabels or sortOrder setting is
>> inconsistent.
>>
>> followed by 2000+ "parent X missing for subtrack Y" messages.
>>
>> Is it because those the new .ra files are broken, or I am doing something
>> wrong?
>>
>> Thanks
>> Ivan
>> _______________________________________________
>> Genome maillist - [email protected]
>> https://lists.soe.ucsc.edu/mailman/listinfo/genome
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
