Hello,
I have used the ensemble 3'UTR sequences (hg19) downloaded from UCSC, to do a motif search exercise. Now I want to use the conservation scores for alignments of 45 vertebrate genomes with Human (hg 19) on these motif positions to see which of the motif sites are more significant in terms of evolutionary conservation. Since I have used ENSEMBL sequences, can I still use these conservation scores ie. will the positions of the UTR sequences differ from the one used to derive the conservation scores? Thanks Manisha Brahmachary, Ph.D. Associate Research Scientist 1130 St Nicholas Avenue ICRC,Room 802,Columbia University New York, NY 10032 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
