hi Leo, We'd be happy to add links to your tracks from our custom tracks page. We'll let you know when they're up.
-Donna ---------------- Donna Karolchik UCSC Genome Browser Project Manager http://genome.ucsc.edu On 3/19/2010 4:21 AM, Leo Schalkwyk wrote: > > There have been several recent papers on allele specific methylation [1] , > allele specific > gene expression [2] and allele specific chromatin signatures [3], and it is > of great interest > to look at these data sets together. > > We have put our data [1] and also a simple representation of Ge et al's > data[2] in custom > UCSC tracks : http://epigenetics.iop.kcl.ac.uk/ASM/ . Reference [3] > mentions that 'Raw > data from this paper are available at GEO (GSE15805 and GSE19622) and the > UCSC Genome Browser.' > but I have not yet found the relevant tracks. > > I wonder if there might be some possibility of making these resources easier > to find and > combine? As a start, could you possibly add our site to the custom track list > http://genome.ucsc.edu/goldenPath/customTracks/custTracks.html > > Thanks ... > > Leo Schalkwyk > > > > [1] Schalkwyk LC, Meaburn EL, Smith R, Dempster EL, Jeffries AR, Davies MN, > Plomin R, Mill J (2010). > Allelic skewing of DNA methylation is widespread across the genome American > Journal of Human > Genetics 86(2):196-212 > [2] Ge B, Pokholok DK, Kwan T, Grundberg E, Morcos L, Verlaan DJ, Le J, Koka > V, Lam KC, Gagné, Dias J, > Hoberman R, Montpetit A, Joly MM, Harvey EJ, Sinnett D, Beaulieu P, Hamon R, > Graziani A, Dewar K, > Harmsen E, Majewski J, Göring HH, Naumova AK, Blanchette M, Gunderson KL, > Pastinen T. (2009) Global > patterns of cis variation in human cells revealed by high-density allelic > expression analysis. > <http://www.nature.com/ng/journal/v41/n11/abs/ng.473.html>Nat Genet. > 41(11):1216-22. > [3] Ryan McDaniell, Bum-Kyu Lee, Lingyun Song, Zheng Liu, Alan P. Boyle, > Michael R. Erdos, Laura J. Scott, Mario A. Morken, > Katerina S. Kucera, Anna Battenhouse, Damian Keefe, Francis S. Collins, > Huntington F. Willard, Jason D. Lieb, Terrence S. Furey, > Gregory E. Crawford, Vishwanath R. Iyer, and Ewan Birney (2010) Heritable > Individual-Specific and Allele-Specific Chromatin > Signatures in Humans Science [DOI: 10.1126/science.1184655] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
