Hello Valeria, The Table browser and the track in group Mapping and Sequencing: GC Percent can be used to obtain the information. Read the GC Open the Table browser for the assembly and track, then paste or upload the coordinates in the region section.
Table browser help: http://genome.ucsc.edu/cgi-bin/hgTables http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html Alternatively, you may want to use the file from hgdownloads and your own tools: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/gc5Base/ Thank you, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 4/5/10 9:46 AM, Vasta, Valeria wrote: > Hello > > > > Is there a way to obtain the GC content of regions using a list of > coordinates such as: > > > > chr1:10193340-10193459 > > chr1:1327079-1327558 > > chr1:1332147-1332266 > > chr1:167721383-167721592 > > chr1:181025469-181025588 > > chr1:19076253-19076372 > > chr1:19088429-19088548 > > chr1:19101541-19101660 > > > > > > Thanks > > > > > > Valeria Vasta > > Assay Development Scientist | Biochemical and Molecular Genetics R&D > > Seattle Children's Research Institute > > 206-884-7674 OFFICE > > 206-987-7660 FAX > > [email protected] > > OFFICE 1900 9th Ave, Seattle, WA 98101 > > MAIL C9S-9 > > WWW seattlechildrens.org<http://seattlechildrens.org/> > > > > > > CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, is > for the sole use of the intended recipient(s) and may contain confidential > and privileged information protected by law. Any unauthorized review, use, > disclosure or distribution is prohibited. If you are not the intended > recipient, please contact the sender by reply e-mail and destroy all copies > of the original message. > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
