Good Afternoon Wes: You should be OK with the source tree without BAM if you do not have USE_BAM=1 defined in your environment. Did you turn on USE_BAM=1 as a shell environment setting anywhere ?
--Hiram ----- Original Message ----- From: "Wes Barris" <[email protected]> To: "Genome List" <[email protected]> Sent: Monday, April 12, 2010 5:50:12 PM GMT -08:00 Tijuana / Baja California Subject: [Genome] Make errors in mirrored src We run a mirror of the UCSC site. After our latest rsync we are getting errors during the "make" step. They appear to be related to SAMtools sam.h and bam.h. Are these a new prerequisite for mirroring the UCSC site? Or, are they supposed to be included in the mirroring step? >> Making source version=[227] [/home/ucsc/bin/mirror_scripts/make_jksrc.sh >> /ucsc/db2/ucsc_mirror_src/kent/src /home/ucsc/logs/build.log] | Tue Apr 13 >> 09:52:14 2010 In file included from validateFiles.c:9: ../../inc/bamFile.h:10:17: error: bam.h: No such file or directory ../../inc/bamFile.h:11:17: error: sam.h: No such file or directory In file included from validateFiles.c:9: _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
