Hiram Clawson wrote: > Pardon me Wes, this appears to be an error in the v227 source > tree. If you could get past this validateFiles directory, > the rest of the tree should be OK. Or get this directory > to top-of-tree status with the public CVS server source tree.
Thanks Hiram. Are you saying that I would have to get the validateFiles tree from CVS and that another rsync would not do it? I didn't quite understand your last sentence. > --Hiram > > ----- Original Message ----- > From: "Hiram Clawson" <[email protected]> > To: "Wes Barris" <[email protected]> > Cc: "Genome List" <[email protected]> > Sent: Monday, April 12, 2010 6:08:27 PM GMT -08:00 Tijuana / Baja California > Subject: Re: [Genome] Make errors in mirrored src > > Good Afternoon Wes: > > You should be OK with the source tree without BAM > if you do not have USE_BAM=1 defined in your environment. > Did you turn on USE_BAM=1 as a shell environment setting > anywhere ? > > --Hiram > > ----- Original Message ----- > From: "Wes Barris" <[email protected]> > To: "Genome List" <[email protected]> > Sent: Monday, April 12, 2010 5:50:12 PM GMT -08:00 Tijuana / Baja California > Subject: [Genome] Make errors in mirrored src > > We run a mirror of the UCSC site. After our latest rsync we are > getting errors during the "make" step. They appear to be related > to SAMtools sam.h and bam.h. Are these a new prerequisite for > mirroring the UCSC site? Or, are they supposed to be included > in the mirroring step? > > >> Making source version=[227] [/home/ucsc/bin/mirror_scripts/make_jksrc.sh > /ucsc/db2/ucsc_mirror_src/kent/src /home/ucsc/logs/build.log] | Tue Apr 13 > 09:52:14 2010 > In file included from validateFiles.c:9: > ../../inc/bamFile.h:10:17: error: bam.h: No such file or directory > ../../inc/bamFile.h:11:17: error: sam.h: No such file or directory > In file included from validateFiles.c:9: > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome -- Wes Barris _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
