Thanks very much, Antonio - that's very helpful. I had seen that link but I wasn't sure if that advice only applied to the phastCons scores I could download via ftp, or those downloaded via Table Browser as well.
best wishes, Janet On May 25, 2010, at 1:59 PM, Antonio Coelho wrote: > Hi Janet, > Our phastCons data uses 1-based coordinates, unlike most other > datasets in our browser. > You can read more about it here: > http://genome.ucsc.edu/goldenPath/help/phastCons.html > Please feel welcome to contact us again with further inquiries. > > Antonio Coelho > UCSC Genome Bioinformatics Group > > Janet Young wrote: >> Hi there, >> >> I have a question for you - hopefully it's an easy one. I've >> downloaded some phastCons scores for some regions I'm interested >> in using TableBrowser. Do the downloaded score files follow a 0- >> based or 1-based coordinate system? >> >> (maybe this could be an addendum to the FAQ question about coords >> differing by one base). >> >> thanks very much! >> >> Janet Young >> >> ------------------------------------------------------------------- >> >> Dr. Janet Young (Trask lab) >> >> Fred Hutchinson Cancer Research Center >> 1100 Fairview Avenue N., C3-168, >> P.O. Box 19024, Seattle, WA 98109-1024, USA. >> >> tel: (206) 667 1471 fax: (206) 667 6524 >> email: jayoung ...at... fhcrc.org >> >> http://www.fhcrc.org/labs/trask/ >> >> ------------------------------------------------------------------- >> >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
