Hello Sridhar, Apologies for sending the wrong reply to you earlier. You might have your microarrayGroups.ra in the wrong place. It does not belong in the trackDb directory, but instead should reside in: kent/src/hg/makeDb/hgCgiData
You can read more about it here: http://genomewiki.cse.ucsc.edu/index.php/Microarray_track#microarrayGroups.ra For future questions about mirror issues, please contact us at: [email protected] Hopefully this will solve the issue. Please contact us again if it persists, or if you have other inquiries. Antonio Coelho UCSC Genome Bioinformatics Group Sridhar A Malkaram wrote: > Hello, > > Could anyone suggest me what's going wrong. > We have a mirror of UCSC genome browser. > I am trying to display a microarray track using data in bed15 format. > > The setting in trackDb.ra is as follows. > > track exp_ctrl_foldChange > type expRatio > visibility full > shortLabel exp_ctrl_foldChange > longLabel exp_ctrl_foldChange > group user > priority 25 > expScale 0.35 > expStep 0.5 > groupings affyAthGroups > > I have defined in microarrayGroups.ra as follows: > > name affyAthGroups > type groupings > all exp_ctrl_foldchange_all > > name exp_ctrl_foldchange_all > type all > description exp vs ctrl foldChange > expIds 0, > groupSizes 1, > names exp_ctrl_foldchange > > I then run make to update configuration. The file loads correctly. > However, in the browser window, I get the error "affyAthGroups not > found" > > > Is there anything wrong in the configuration? or am I missing to do > anything? > > Thank you very much in advance for your suggestions. > > > sridhar > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
