Hi Gianna, When you do the Table Browser query for a region, you will get all the exons of all the variants for any gene that falls in those coordinates. To get only the exons for the main variant of a gene, click on the "paste list" button next to "identifiers (names/accessions)". In there paste the name of your main variant, which in this case is most likely uc001qcd.2. Continue from here as you did in your screen shots.
Something else I noticed in your screen shots is that you didn't have the "5' UTR Exons" and "3' UTR Exons" check boxes selected. The ITM1 gene has one exon in the 5' UTR region, thus I recommend selecting this check box to see all 18 exons you mention. I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 7/16/10 7:31 AM, [email protected] wrote: > > * > * > * > > Dear Colleagues > > > > We have been known that the ITM1 gene has around 18 exons (PubMed > and Ensembl Genome). However, after our search by exon regions in this > gene, it appears the FASTA format with 78 sequences in upper case, > which should be exons (see attached). > > > > We don?t know how to take the mean this FASTA format sequence. > Please, how can I understand this information? > > > > Our main search is looking for promoter and exon sequences. > > Thank you in advance. > > Best regards, Gianna Carvalheira > > Gianna Carvalheira, Ph.D. > Professor Adjunto de Genetica, Depto. Morfologia e Genetica > Rua Botucatu, 740, > 04023-900, SP > Fone: +55 11 55764260 > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
