Hello Tapas, If you have not been able to extract sequences yet, here is the FAQ: http://genome.ucsc.edu/FAQ/FAQdownloads.html#download32
Also, this sample helper script may be of interest to you. Some modifications will be necessary, but it shows how to use the relevant kent source utilities & files to extract sequence and to reverse compliment (-) stranded queries on the line-command. http://genomewiki.cse.ucsc.edu/index.php/Fetch_fasta_sequence_for_identifier_list I hope this information is helpful. Please feel free to contact the help mailing list again if you require further assistance. Best regards, Jen UCSC Genome Browser Support On 6/23/10 11:19 PM, Tapas Bhadra wrote: > Sir, > I am a Research Fellow at Indian Statistical Institute, Kolkata, > India. I have downloaded all sequential informations of all > chromosomes. Pls. can u say if i need sequences from 1000 to 1500 of > chr 6 and also from 1000 to 1500 of chr 6 then how will i btain those > informations. Are they same? Is ur database strand specific? If yes > then which strand specific and for this strand specific database how > will we obtain sequential info. of reverse strand? > Thanking you, > Tapas Bhadra, > Senior Research Fellow, > Indian Statistical Institute, Kolkata, > India > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
