Hi Tapas, My apologies - the browser is looking for default values to enter into the position text box. The link below should work for hg18, chr6:1000-1500:
http://genome.ucsc.edu/cgi-bin/hgc?g=getDna&i=mixed&c=chr6&l=999&r=1500&db=hg18 Best, Mary --------------------- Mary Goldman UCSC Bioinformatics Group On 6/24/10 4:57 PM, Tapas Bhadra wrote: > Sir, > Thanks for your reply. But when I am trying to go into the site it > shows that "hashMustFindVal: 'c' not found " in that page. > > Pleaes reply at your earliest convenience. > > Thanking you, > Tapas Bhadra, > Senior Research Fellow, > Indian Statistical Institute, > Kolkata, > India > > > >> Hi Tapas, >> >> Whether you obtain the DNA sequence through our downloads page or the >> "DNA" button in the blue bar when you are viewing an assembly, it always >> defaults to the positive strand. The easiest way to get DNA for a short >> sequence, such as the one you mentioned in your email, is to use the >> "get DNA" feature (http://genome.ucsc.edu/cgi-bin/hgc?g=getDna). Simply >> type in the coordinates and click the "get DNA" button. Note that you >> can also get DNA from the negative strand by clicking the "reverse >> complement" check box. >> >> I hope this answers this question and both of your questions that were >> emailed to our team yesterday. Please feel free to contact the mail list >> again if you require further assistance. >> >> Best, >> Mary >> ------------------ >> Mary Goldman >> UCSC Bioinformatics Group >> >> On 6/24/10 4:33 AM, Tapas Bhadra wrote: >> >>> Dear Sir, >>> I am a research fellow at the Indian Statistical Institute, Kolkata, >>> India. >>> >>> I have downloaded the sequences of all the chromosomes. Can you please >>> inform me that if I need sequences from 1000bp to 1500bp of chr 6 from >>> +ve >>> strand and also from 1000bp to 1500bp of chr 6 from -ve strand, then how >>> will I obtain those information. Will they be same? >>> >>> Is your database strand specific? If yes then which strand it annotates >>> for the sequence and for this strand specific database how will we >>> obtain >>> sequential information from the reverse strand? >>> >>> Pleaes reply at your earliest convenience. >>> >>> Thanking you, >>> Tapas Bhadra, >>> Senior Research Fellow, >>> Indian Statistical Institute, >>> Kolkata, >>> India >>> This mail is scanned by Ironport >>> >>> >>> _______________________________________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>> >>> >> This mail is scanned by Ironport >> >> >> > This mail is scanned by Ironport > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
