Hi Ivan, Information on how the FASTA files for the conservation track are formatted can be found here: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html#FASTA, under "Explanation of CDS FASTA header format".
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 8/12/10 3:31 PM, Ivan Adzhubey wrote: > Hello, > > Could someone point me to a description of defline format for the multiz46way > FASTA files? For instance: > > >> uc010nxq.1_hg19_1_3 38 0 2 chr1:12190-12227+ >> > ATGAGTGAGAGCATCAACTTCTCTCACAACCTAGGCCA > >> uc010nxq.1_panTro2_1_3 38 0 2 chr15:100048575-100048624- >> > ATGAGTGAGAGGATCAACTTCTCTGACAGCCTAGGCCA > >> uc010nxq.1_gorGor1_1_3 38 0 2 >> > What is the meaning of the numbers following (obviously) the knownGene and > assembly version id's? > > Thanks, > Ivan > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
