Hi, We have been using BED-style interbase-0 coordinates for all segments. We have some users reporting some inconsistency of genomic coordinate display on UCSC genome browser. Is that you add "1" to the value on this page? http://genome.ucsc.edu/cgi-bin/hgGene?hgg_gene=uc004fth.2&hgg_prot=Q8NFZ3&hgg_chrom=chrY&hgg_start=16636453&hgg_end=16955848&hgg_type=knownGene&db=hg19&hgsid=167660007 Are you reporting base-1 style coordinates on that particular page?
Thanks Yu Yu Chen | Application Scientist | Application Science AFFYMETRIX, INC. | 3420 Central Expressway | Santa Clara, CA 95051 | Tel: 408-731-5329 | Fax: 408-731-5375
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