Hi Yu, All of the coordinates you see displayed in the Genome Browser are 1-based coordinates. Our tables contain 0-based coordinates. See this FAQ for a more detailed explanation:
http://genome.ucsc.edu/FAQ/FAQtracks.html#tracks1 In the future, please send Genome Browser questions just to [email protected] (there is no need to email [email protected] too). -- Brooke Rhead UCSC Genome Bioinformatics Group On 08/17/10 16:01, Chen, Yu wrote: > Hi, > > We have been using BED-style interbase-0 coordinates for all segments. We > have some users reporting some inconsistency of genomic coordinate display on > UCSC genome browser. Is that you add "1" to the value on this page? > http://genome.ucsc.edu/cgi-bin/hgGene?hgg_gene=uc004fth.2&hgg_prot=Q8NFZ3&hgg_chrom=chrY&hgg_start=16636453&hgg_end=16955848&hgg_type=knownGene&db=hg19&hgsid=167660007 > Are you reporting base-1 style coordinates on that particular page? > > Thanks > > Yu > > > > Yu Chen | Application Scientist | Application Science > AFFYMETRIX, INC. | 3420 Central Expressway | Santa Clara, CA 95051 | Tel: > 408-731-5329 | Fax: 408-731-5375 > > > > > > ------------------------------------------------------------------------ > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
