Hi Daniel, I have just been reminded by my colleagues that the automatic dumps of the database to the download files are weekly, rather than daily. Thus, ensGene.txt will not be available until Sunday. However, if you email me your assembly of interest, I can make the download file available by Tuesday.
Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group ----- Original Message ----- From: "Mary Goldman" <[email protected]> To: "Daniel Klevebring" <[email protected]> Cc: [email protected] Sent: Friday, August 20, 2010 11:20:31 AM GMT -08:00 US/Canada Pacific Subject: Re: [Genome] Update of ensembl genes to 37.59 Hi Daniel, You can obtain the Ensembl Genes release version number by clicking on a gene in the Ensembl Genes track or in our release log (http://genome.ucsc.edu/goldenPath/releaseLog.html) for your assembly of interest. We try to release the Ensembl Genes track soon after Ensembl updates their gene set. We hope to release the latest version of Ensembl Genes (v59) by the end of the day on Monday; the download files, including ensGene.txt, should be updated by Tuesday morning. If you need this file sooner, please let us know. I hope this information is helpful. Please feel free to contact the mail list if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group ----- Original Message ----- From: "Daniel Klevebring" <[email protected]> To: [email protected] Sent: Friday, August 20, 2010 12:57:28 AM GMT -08:00 US/Canada Pacific Subject: [Genome] Update of ensembl genes to 37.59 Hi, I was wondering when the Ensembl Genes will be updated to the latest version? Currently, UCSC GB does not state which version of EnsEMBL is used, but it says that it's updated last in may 2010. What is the release schedule when new EnsEMBL versions are released? I am specifically interested in the file ensGene.txt. If possible, I could generate this myself for example for the GTF file that EnsEMBL release on their web site. Do you have custom scripts for this, and/or would it be possible for you to that this scripts? Thanks a lot Daniel Klevebring -- Contact information: Daniel Klevebring, Ph. D. Department of Medical Epidemiology and Biostatistics Karolinska Institute Nobels Väg 12A, P. O. Box 281 SE-17 177 Solna Sweden Phone: +46 704 71 65 91 (Mobile) _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
