Thanks Katrina, that works. Any way to do it for all samples at once ? I have 12 tracks.
Danny -----Original Message----- From: Katrina Learned [mailto:[email protected]] Sent: Friday, August 27, 2010 12:55 PM To: Vanessa Kirkup Swing Cc: Muehlschlegel, Jochen D.,M.D.; [email protected] Subject: Re: [Genome] FW: Genome browser scale Hi Jochen, I just wanted to follow-up the email my colleague sent with some additional information. At this point, auto-scale can only take into account a single dataset. However, you can manually configure the graphs to display the same y-axis scale. To set all datasets within a composite track to the same y-scale, you can click on the name of the View you are using (ex. Raw Signals) and the graph configuration controls should appear. From here, under "Data view scaling," you can select "use vertical viewing range setting" and set the min and max of the Vertical viewing range to whatever you like. If you are comparing datasets in different composites, set the vertical viewing range the same in both composites. For more information on the graph configurations, see this page: http://genome.ucsc.edu/goldenPath/help/hgWiggleTrackHelp.html Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group Vanessa Kirkup Swing wrote, On 08/26/10 14:55: > Dear Jochen, > > Unfortunately, the browser currently doesn't have this feature. Your suggestion will be forwarded to our management team for consideration. > > If you require further assistance, please don't hesitate to contact the mailing list. > > Vanessa Kirkup Swing > UCSC Genome Bioinformatics Group > > ----- Original Message ----- > From: "Jochen D. Muehlschlegel,M.D." <[email protected]> > To: [email protected] > Sent: Thursday, August 26, 2010 12:46:58 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] FW: Genome browser scale > > Hi, > > when comparing two gene expression datasets in the genome browser, the y-axis > scale defaults to the maximum to display an individual tract appropriately. The > number then displayed on the left is nice to know the maximum expression, but it > makes it hard to compare two samples accross many exons. Is it possible to > manipulate the y-axis scale to have it the same for all samples ? > > Thanks, > > Danny > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
