Hi, I am working on human and mouse gene expression data, GNF Gene Atlas 2. I need to get the multiple alignments of ONLY EXONS of my probesets. In UCSC Table Browser, what I am trying to do is to somehow get the coordinates of every exon of the human (and mouse) genome. I used "RefSeq Genes -> refFlat" to get the RefSeq genes' exon coordinates but the problem is that many of the probesets don't map to RefSeq genes that makes such probesets useless.
So, my question: how to map ALL my probesets to the human (and mouse) genome and get the coordinates of ALL possible exons (that could possibly be found for the genome)? Thanks for your help David _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
