Hello Raf, The UCSC Browser only hosts a single assembly for this species: Nov. 2009 SGSC Sscrofa9.2 NCBI project 10718, GCA_000003025.2
We are very sorry for not being able to help more with the lifts from the earlier assemblies. For future reference, the liftOver files are on the Downloads server: http://hgdownload.cse.ucsc.edu/downloads.html common name -> assembly -> directory "LiftOver" For the susScr2 assembly, this would be: http://hgdownload.cse.ucsc.edu/goldenPath/susScr2/liftOver/ (note there are only 4 files, all pointing to other species) Please feel free to contact the mailing list support team in the future if you would like more assistance. Warm regards, Jen UCSC Genome Browser Support On 9/4/10 11:06 AM, [email protected] wrote: > Hello, > I'm interested to make conversions between assemblies 7/8 and 9 in > Sscrofa. Where we can download the chain files? > Thank you > Raf > > <Signature> > Raffaele Fronza PhD Student > Biocomputing Group > Bologna University > Department of Biology > via S. Giacomo 9/2 40126 Bologna ITALY > [email protected] > http://lipid.biocomp.unibo.it/~raffo/index.htm > </Signature> > ############################################### > # The indispensable first step to getting the # > # things you want out of life: # > # decide what you want. # > # —Ben Stein # > # ------------------------------------------- # > # geek:~$ grep woman myLife.dat|wc # > # 0 0 0 myLife.dat # > # geek:~$ _ # > # - R.F. # > ############################################### > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
