Hello,

An "N" in the genomic sequence represents a gap. See the Gap track 
description for an explanation of the types of gaps we annotate this way 
and the gap table for the coordinates of these regions. Some of these 
are of known length and some are estimates.

Thanks,
Jennifer Jackson
UCSC Genome Bioinformatics Group


Yongsheng Bai wrote:
> Hi,
>
>  
>
> If the "base position" in the UCSC genome browser shows all "N"s, what does
> this mean?
>
>  
>
> Thanks,
>
> YB
>
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