YB, You're very close to getting the answer. The missing step is to toggle the "output format" pulldown to "sequence".
I hope this helps, Kayla Smith UCSC Genome Bioinformatics Group ----- "Yongsheng Bai" <[email protected]> wrote: > Hi Jennifer, > > Thanks for the response. But I didn't see any of tables under "Gene > and Gene > Prediction" track has the field for nucleotide sequence which codes > the > protein. Which table should I join with "KnownGene" or link to? > > Thanks, > YB > > -----Original Message----- > From: Jennifer Jackson [mailto:[email protected]] > Sent: Tuesday, June 30, 2009 5:01 PM > To: [email protected] > Cc: [email protected] > Subject: Re: [Genome] question > > Hello, > > The data would be contained in a "Gene and Gene Prediction" track. > Check > out the group's track contents using the Assembly browser (click on > track name for details (source/methods). UCSC Genes would be the > primary > recommended track). > > Once a target track is selected, follow the instructions here to > obtain > the data. Files in Downloads are named the same as in the Table > browser > - just add a .txt.gz for the data files and a .sql for the schema > files. > http://genome.ucsc.edu/FAQ/FAQdownloads#download1 > http://genome.ucsc.edu/FAQ/FAQdownloads#download31 > > Also, some details about using the Table browser and the data contents > > in the UCSC Gene's associated tables is contained in this earlier > mailing list response: > https://lists.soe.ucsc.edu/pipermail/genome/2009-June/019349.html > > Thank you, > Jennifer Jackson > UCSC Genome Bioinformatics Group > > Yongsheng Bai wrote: > > Dear Sir or Madam, > > > > > > > > How to download all human protein-coding genes' full coding region > > > > sequences (CDS) with the genomic coordinates for the beginning and > end of > > this CDS from the UCSC site? > > > > > > > > Thanks, > > > > YB > > > > > > > > > > > > > > > > > > > > _______________________________________________ > > Genome maillist - [email protected] > > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
