Hello, Complete genomic sequence is available from our Downloads server. Use the web page to determine the path to the file(s) then use ftp to get the data (the goldenPath/<db>/ url is the same as the unix path).
UCSC Browser home page -> Downloads http://genome.ucsc.edu/ Click on "Downloads" on the left blue side bar. Then navigate the web page to the assembly of interest. Genomic sequence is located in these directories: # Full data set # Data set by chromosome Some help links: http://genome.ucsc.edu/FAQ/FAQdownloads#download1 http://genome.ucsc.edu/FAQ/FAQformat http://genome.ucsc.edu/cgi-bin/hgTables The comment "genbank format" is difficult to interpret. For most assemblies, we do not alter the source genomic sequence. Information on the UCSC Browser's Gateway page for each genome contains the internally abbreviated name (ex: hgXX), NCBI build date/version, external links, credits, and other build-specific comments. README files in the ftp directory and the "describe schema" tool in the Table browser (for annotation tracks) explains file contents/format. Hope this helps, Jennifer Jackson UCSC Genome Bioinformatics Group Claire Hidalgo-Curtis wrote: > To whom it may concern, > > Is it possible to download the entire genomic sequence in a genbank > format saved as a text file to allow import into mutation surveyor a > program designed to compare your sequence versus the published one ? > > Thanks > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
