Hi Sushmita, If you have the accession numbers for your set of mRNAs, you can obtain the associated gene names using the Table Browser.
Click "Table" in the blue bar at the top of the page and make the following selections: clade: Mammal genome: Human assembly: choose the assembly you work with group: mRNA and EST Tracks track: Human mRNAs table: gbCdnaInfo identifiers (names/accessions): hit "paste list" and paste your mRNA accession numbers here output format: selected fields from primary and related tables Click "get output." Before making your selections in the gbCdnaInfo table, go to the "Linked Tables" section of the page and select geneName and productName. Click "Allow Selection From Checked Tables." Now, select the fields you wish to see from these tables. I would suggest selecting at least the following fields: from gbCdnaInfo select "acc" and from each of the other tables (geneName and productName) select "name." Click "get output" (located under the gbCdnaInfo field list). The results will contain information about your mRNAs, including the name of the gene with which each is associated. Please don't hesitate to contact the mail list again if you require further assistance. Katrina Learned UCSC Genome Bioinformatics Group Susmita Paul wrote: > Dear Sir/Madam, > > I have a set of mRNAs. I want to find gene names against those mRNAs. These > mRNAs are of > human genome. Kindly reply about these tables, and how to connect them. > > Thanking you > > Sushmita Paul > Project Linked Personnel > Machine Intelligence Unit > Indian Statistical Institute > 203, B.T. Road > Kolkata 700108 > India > This mail is scanned by Ironport > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
