Hi. Thanks again for providing such a great resource - I was curious if there had been any progress with the question below. Also since I will be out of the office starting tomorrow I am cc'ing two colleagues who will be working on this project. If a response could be sent to all thee e-mail addresses that would be great. After looking at the format of the human and rat refgene.txt files I do see a number of differences which I'm assuming are causing the error I get in my third party software; could you confirm that the files are different in format and, if that is the case, let me know if (and when) there are plans to provide a rat file of the same format as the human file. Thanks in advance,
Liz Worthey Senior Research Scientist Human and Molecular Genetics Center Bioinformatics Program Medical College of Wisconsin [email protected] Tel: 414-456-7426 Fax:414-456-6595 M4677 http://rgd.mcw.edu <http://rgd.mcw.edu/> From: Worthey, Elizabeth A. Sent: Thursday, June 04, 2009 8:53 AM To: '[email protected]' Subject: Rat refGene.txt file Hi. I'm having problems using the Rat refGene.txt file in a sequence assembly using the Roche gsMapper application. I have no problems using the same file created for H. sapiens, and download these files for different organisms through the same process. Could you let me know whether there are differences between the files (the creation method, underlying tables etc.) for the rat and other organisms? Thanks in advance, Liz Worthey _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
