Hi Liz, I replied to your question on 6/4/09 at around 5 p.m. (Pacific time). A copy of the reply is in our online archives, here:
https://lists.soe.ucsc.edu/pipermail/genome/2009-June/019171.html If you still have questions, please feel free to write back to us at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 06/10/09 14:46, Worthey, Elizabeth A. wrote: > Hi. Thanks again for providing such a great resource - I was curious if > there had been any progress with the question below. Also since I will > be out of the office starting tomorrow I am cc'ing two colleagues who > will be working on this project. If a response could be sent to all thee > e-mail addresses that would be great. After looking at the format of the > human and rat refgene.txt files I do see a number of differences which > I'm assuming are causing the error I get in my third party software; > could you confirm that the files are different in format and, if that is > the case, let me know if (and when) there are plans to provide a rat > file of the same format as the human file. Thanks in advance, > > > > Liz Worthey > > Senior Research Scientist > > Human and Molecular Genetics Center > > Bioinformatics Program > > Medical College of Wisconsin > > [email protected] > > Tel: 414-456-7426 > > Fax:414-456-6595 > > M4677 > > http://rgd.mcw.edu <http://rgd.mcw.edu/> > > > > From: Worthey, Elizabeth A. > Sent: Thursday, June 04, 2009 8:53 AM > To: '[email protected]' > Subject: Rat refGene.txt file > > > > Hi. I'm having problems using the Rat refGene.txt file in a sequence > assembly using the Roche gsMapper application. I have no problems using > the same file created for H. sapiens, and download these files for > different organisms through the same process. Could you let me know > whether there are differences between the files (the creation method, > underlying tables etc.) for the rat and other organisms? Thanks in > advance, > > > > Liz Worthey > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
