Hi Sandip, The raw wiggle data used for the Affymetrix Transcriptome Phase 3 Long RNA and Short RNA Signal tracks on the hg18 browser are available for download here: http://hgdownload.cse.ucsc.edu/goldenPath/hg18/affyTxnPhase3/
Please don't hesitate to contact the mail list again if you require further assistance. Katrina Learned UCSC Genome Bioinformatics Group Datta, Sandip wrote: > Dear Sir, > > > > I am a postdoctoral fellow in Computational and Integrative Biology (CCIB) > center, under MGH and Harvard University. > > My mail concerns the Affymetrix tiling array data files for different cell > lines. This data is available from your ftp site at > ftp://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/ > > > > The files that I refer to are named in format affyTxnPhase3*.txt.gz. (These > are > tiling array data files for 8 call lines). > > The data in these files are given in coarse-grained format, i.e. for every > (about) 1KB window of genome the sum and sum square of the signal is given, > along with range and minimum value of the signal within that window. > > > > For the purpose of our analysis it would be helpful if we can obtain the > entire > signal data, i.e. data at each location of the genome for all the cell lines. > We > will be thankful if you can kindly direct us to the entire data source. Please > let me know if you need any clarification. > > > > Thanks, > > Sandip > > > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
