Hi, yes i noticed that....but sorry i can not understand C language command line i use add -fine and -q=rna used to map probe of microarray to genome so maybe that cause the inconsistent from Jim's formula?
On Wed, Jun 24, 2009 at 10:13 PM, Hiram Clawson <[email protected]> wrote: > Please note: > > http://genome.ucsc.edu/FAQ/FAQblat > > --Hiram > > > > Daofeng Li wrote: > >> Hi, >> >> i think this problem might be discussed for many times and i do find som >> search results for that >> one mail i searched is of Jim which contains: >> //// >> Hmm. You could just use the -out=blast option if you >> really want a drop-in replacement. Otherwise try >> >> percentId = 100.0 * (match + repMatch) / >> (misMatch + match + repMatch + qNumInsert + tNumInsert) >> ///// >> >> i had try that formula,find the result output by command line blat still >> different with webblat... >> can anyone give another calc method? or something of mine wrong? >> >> Best Wishes. >> > -- Daofeng Li,PhD Candidate China Agricultural University _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
