Hello, The general path would be to create a custom track of the EST data and perform an intersection against it using the RefSeq track. Create the EST custom track using the Table browser (identifiers, genomic position, etc) or load your own data using the Custom track tool. http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html#SimpleIntersection
The Table browser will return all rows of data with a match - exactly as it is formatted in the original Refseq track. This means that if you are intersecting multiple regions, it will be difficult to know which ESTs pulled out which RefSeq sequences. For a full join with data from both files, send your custom Est track and the Refseq track output to Galaxy and perform a full join of the data using their tools. Jennifer Jackson UCSC Genome Bioinformatics Group Massimo wrote: > Hi, > > I was wondering if there is a way to retrieve Refseq from large amount of > bovine EST in Table Browser. > > > > Thanks! > > > > Massimo Bionaz PhD > > Post-doctoral researcher > > Institute for Genomic Biology, > > University of Illinois > > 366 Animal Sciences Laboratory > > 1207 W. Gregory Dr. > > Urbana, IL 61801 > > USA > > Office Tel: 1-217-333-6189 > > Fax: 1-217-333-8286 > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
