Hi Nicholas, Unfortunately, there is no straightforward way of obtaining the data you are looking for. A good track for finding orthologous regions is the TransMap tracks, however there is no TransMap track based on Ensembl Genes (there are ones for UCSC Genes and RefSeq Genes).
One way to do this would be to go to the human genome and obtain all the orthologous TransMap RefSeq genes and coordinates to chimp and mouse. Then, for each organism, do an approximate intersection using the table browser between those coordinates and Ensembl IDs. While there will not be a one-to-one coorespondance between RefSeq Genes and Ensembl Genes, it will probably still result in quite a few genes. If you need help doing this, please feel free to contact the mail list again. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group ----- Original Message ----- From: "Nicholas Price" <[email protected]> To: [email protected] Sent: Tuesday, September 28, 2010 12:29:31 PM GMT -08:00 US/Canada Pacific Subject: [Genome] Question Hi I was wandering if there was a way to download the Orthologous nucleotide coding sequences between Chimp, Human, and Mouse and there corresponding Ensembl Ids Nicholas -- The oppressed become the oppressors Paulo Freire (1921-1997) _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
