Please use the .2bit files instead of concatenating the fasta ascii files. Much more efficient.
You may also like to read about alignment procedures: http://en.wikipedia.org/wiki/Sequence_alignment and blat documentation: http://genome.ucsc.edu/goldenPath/help/blatSpec.html --Hiram _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
