Hi Miguel, If you already have a list of human genomic positions, you can convert them using the Batch Coordinate Conversion(liftOver) tool. From the UCSC Genome Bioinformatics homepage, click on "Utilities" on the left-side navigation menu. On the following page, click on "Batch Coordinate Conversion (liftOver)". After selecting the assemblies of your choice, paste in your coordinates (or upload a file containing the coordinates) and click "Submit". Please note, this tool supports 2 data formats: BED and Position. More information on the BED format can be found here: http://genome.ucsc.edu/goldenPath/help/customTrack.html#BED. Once you have submitted your data, scroll down to "Results" and click on "View Conversions".
Please contact us again at [email protected] if you have any further questions. Best, Luvina --- Luvina Guruvadoo UCSC Genome Bioinformatics Group andrade, miguel wrote: > Hello, > > I wanted to know whether within the UCSC Genome Browser data there is a table > with a detailed correspondence between genomic positions in the mouse and > human genomes. > > Ideally we would need a table telling for each human genomic position (1) > whether there is an equivalent mouse genomic position, and in that case (2) > where that position is. > > Thanks, > Miguel Andrade > Computational Biology and Data Mining group > Max Delbrück Center for Molecular Medicine > Robert-Rössle-Str. 10, > 13125 Berlin, Germany > Tel: +49-30-9406-4250 > Fax: +49-30-9406-4240 > email: [email protected] > web: http://cbdm.mdc-berlin.de/andrade > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
