Hello Luvina,
thanks, your answer helped a lot - however if I search for a table
like "T-cell" or "lymphoblastoid", I get no result passing the filter
- even with Assembly hg19, which I cannot believe.
Below I paste the output I am always getting:
#filter: ("%lymphoblastoid%")
#id name crc
# No results passing filter.
In the filter I chose "ignored for "id" and "CRC" - is that correct?
Thanks a lot for your help - I appreciate it a lot.
cheers Ruth.
Zitat von Luvina Guruvadoo <[email protected]>amMi 16 Mär 2011 00:50:31 CET:
> Hello Ruth,
>
> In this case, you want to filter by "cell" type
> (http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=est). To view a
> list of valid terms for the "cell" text box, go to the Table Browser
> (located in the top blue navigation bar) and select the following:
>
> clade: Mammal
> genome: Human
> assembly: (select an assembly)
> group: All Tables
> database: hg19 (or select appropriate database)
> table: cell
> filter: click "create" then type the following next to Free-form query:
> name like "%lymphoblastoid%" . Click submit. (for T cells, type: name
> like "%T cell%")
> output format: selected fields from primary and related tables.
>
> Click "get output". From here, select "name" then "get output". This
> will provide a list of valid cell type names you can use for filtering.
>
> I hope this helps. If you have any further questions, please contact us
> again at [email protected].
>
> ---
> Luvina Guruvadoo
> UCSC Genome Bioinformatics Group
>
>
> Ruth Grychtol wrote:
>> Dear all,
>>
>> I want to specify the settings of the human EST Track and human
>> mRNA track - especially I only want information of lymphoblastoid
>> cells or T cells. To do so I am advised to got to the Table
>> Browser that corresponds to the factor on which I wish to filter.
>> Can anyone tell me how to do so?
>>
>> Cheers Ruth.
>>
>>
>>
>>
>> _______________________________________________
>> Genome maillist - [email protected]
>> https://lists.soe.ucsc.edu/mailman/listinfo/genome
>>
--
Dr. Ruth Grychtol
UNIVERSITÄTSKLINIK FREIBURG
Zentrum für Kinder- und Jugendmedizin
Mathildenstraße 1, D-79106 Freiburg
http://www.kinderklinik.uniklinik-freiburg.de
[email protected]
----- Ende der weitergeleiteten Nachricht -----
--
Dr. Ruth Grychtol
UNIVERSITÄTSKLINIK FREIBURG
Zentrum für Kinder- und Jugendmedizin
Mathildenstraße 1, D-79106 Freiburg
http://www.kinderklinik.uniklinik-freiburg.de
[email protected]
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
