Hi Ruth,
It sounds like you may be typing in "%lymphoblastoid%", rather than
'name like "%lymphoblastoid%". The 'name like' part is required to
search for cell names containing 'lymphoblastoid'. So this is what you
need to type in Free-form query: name like "%lymphoblastoid%". You are
also correct; "id" and "CRC" should be ignored.
---
Luvina Guruvadoo
UCSC Genome Bioinformatics Group
Ruth Grychtol wrote:
> Hello Luvina,
>
> thanks, your answer helped a lot - however if I search for a table
> like "T-cell" or "lymphoblastoid", I get no result passing the filter
> - even with Assembly hg19, which I cannot believe.
> Below I paste the output I am always getting:
> #filter: ("%lymphoblastoid%")
> #id name crc
> # No results passing filter.
>
> In the filter I chose "ignored for "id" and "CRC" - is that correct?
>
> Thanks a lot for your help - I appreciate it a lot.
>
> cheers Ruth.
>
>
>
> Zitat von Luvina Guruvadoo <[email protected]>amMi 16 Mär 2011 00:50:31 CET:
>
>
>> Hello Ruth,
>>
>> In this case, you want to filter by "cell" type
>> (http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=est). To view a
>> list of valid terms for the "cell" text box, go to the Table Browser
>> (located in the top blue navigation bar) and select the following:
>>
>> clade: Mammal
>> genome: Human
>> assembly: (select an assembly)
>> group: All Tables
>> database: hg19 (or select appropriate database)
>> table: cell
>> filter: click "create" then type the following next to Free-form query:
>> name like "%lymphoblastoid%" . Click submit. (for T cells, type: name
>> like "%T cell%")
>> output format: selected fields from primary and related tables.
>>
>> Click "get output". From here, select "name" then "get output". This
>> will provide a list of valid cell type names you can use for filtering.
>>
>> I hope this helps. If you have any further questions, please contact us
>> again at [email protected].
>>
>> ---
>> Luvina Guruvadoo
>> UCSC Genome Bioinformatics Group
>>
>>
>> Ruth Grychtol wrote:
>>
>>> Dear all,
>>>
>>> I want to specify the settings of the human EST Track and human
>>> mRNA track - especially I only want information of lymphoblastoid
>>> cells or T cells. To do so I am advised to got to the Table
>>> Browser that corresponds to the factor on which I wish to filter.
>>> Can anyone tell me how to do so?
>>>
>>> Cheers Ruth.
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> Genome maillist - [email protected]
>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome
>>>
>>>
>
>
>
>
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