Hi Ruth, It looks like you have uncovered a bug. We were able to reproduce the error by turning on the MGC Genes track in the mm9 browser and searching for the Pphln1 gene. As a work-around for now, please set the MGC genes to hide and use one of the other gene tracks instead. This should enable you to use the browser without the errors for now. Our engineers are looking into this and will hopefully have a fix soon. Sorry for the inconvenience!
Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group Ruth Bennett wrote, On 3/18/2011 1:29 AM: > Hi Vanessa, > Sorry for not giving enough information. > As far as I'm aware, I'm using the main site at http://genome.ucsc.edu/ > The assembly is Mouse July 2007 (NCBI37/mm9). > > I still get the same error this morning & have attached a screenshot, > in case it's useful. > Thanks > Ruth > > > Vanessa Kirkup Swing wrote: >> Hi Ruth, >> >> Could you please tell me which assembly and gene model you are using? >> >> With the information you have given, we're are unable to reproduce >> the error. It is possible that you are using a mirror site and not >> the official UCSC Genome Browser website (http://genome.ucsc.edu). >> If you aren't using a mirror, please reply to the mailing list with >> more detailed information so we can further assist you. >> >> Thanks! >> >> Vanessa Kirkup Swing >> UCSC Genome Bioinformatics Group >> >> >> ----- Original Message ----- >> From: "Ruth Bennett" <[email protected]> >> To: [email protected] >> Sent: Thursday, March 17, 2011 7:46:24 AM >> Subject: [Genome] Error message >> >> * baseColorDrawSetup: BC150854: mRNA size (3106) != psl qSize >> (3105) >> >> Hi, >> I get the error message pasted above whenever I try to access the >> mouse gene Pphln1. >> It doesn't seem to matter whether I just search for the gene name or >> try to BLAT some sequence that belongs to the locus. >> Please could you either fix this, or tell me what I need to do to >> view this gene? >> Thanks >> Ruth Bennett >> >> >> > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
