Hi, I'm looking for a way to retrieve sequence alignments for a specified mRNA Accession number. I know this is possible via the browser but I would like to add this ability to a program I am writing. I already found how to get the exon start and stop locations from the MySql database (hg19), but I haven't found how to get the sequences from the database. The only way I have found the sequences was over at http://hgdownload.cse.ucsc.edu/goldenpath/hg19/multiz46way/alignments/ and those are huge files, way too big for users of my program to download.
Is there a way in which I can access the sequence segments which the database mentions, other than having users download a ~300mb file? Daniel Peterson _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
