Good Morning: All this information can be found in two AGP files we deliver with the release in:
ftp://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/ in the files: chromAgp.zip and contigAgp.zip This same information is also available in the gold tables in the database. The *_random sequences do not have NC accession numbers. --Hiram Shankar Ajay Subramanian wrote: > Hello, > > I was wondering if there's a way to obtain the exact accession and versions > for all hg18 chromosome FASTA sequences that are present in goldenPath (e.g. > NC_000001.<version> for chr1, <Accession.version> for chr10_random, etc.) as > of the last update (Dec 2005). > > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/chromosomes/ > >>From the NCBI release notes ( > http://www.ncbi.nlm.nih.gov/genome/guide/human/release_notes.html#b36) I was > able to find the accessions only for chr[1-22XYM] but wanted to make sure > that the versions reflect what is on goldenPath. I couldn't find anything > for the "randoms". > > Thanks, > Shankar > > -- > Subramanian Shankar Ajay > Postdoctoral fellow > NIH/NHGRI _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
