Hi Jacob, Are you referring to data from this track: Other RefSeq (http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&c=chrM&g=xenoRefGene)? If that is the case, you would want to download this flat file:
http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/xenoRefGene.txt.gz If this isn't the case, please email the mailing list ([email protected]) with the track that you are referring to and we will help you locate the file. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group On Thu, Jun 23, 2011 at 2:42 PM, Jacob Biesinger <[email protected]> wrote: > Hi! > > I'm used to working with refGene, available at > http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz. I > noticed recently that there are no entries in refGene for mitochondrial > genes, and further investigation shows that the genes on chrM are all > "Medium blue -- other RefSeq transcripts". I am wondering what the most > appropriate flat file would be to use for these unconfirmed genes. Is there > a refOtherGene.txt.gz that I'm missing? > > Thanks! > -- > Jake Biesinger > Graduate Student > Xie Lab, UC Irvine > (949) 231-7587 > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
