Hello, I have a list of genomic ranges.
For example: chr2:98,494,001-98,515,000 chr1:155,260,001-155,274,000 ... In an automated fashion I would like to enter each range into the "position/search" box of the UCSC Genome Browser and then (also in an automated fashion) click the "PDF/PS" button on the Genome Browser and save the current browser graphic in a PDF file (which I would like to be able to name in an automated fashion). Does anyone have any suggestions? This can be done with the Broad Institute's IGV as follows. My program creates a text file like the following: snapshotDirectory c:\temp goto chr2:98,494,001-98,515,000 snapshot rgn001.png goto chr1:155,260,001-155,274,000 snapshot rgn002.png ... Then, from IGV I choose file->Run Batch Script... and the plots are created. I would like to do the same with the UCSC Genome Browser because it has so many more tracks of interest readily available. If this feature does not exist for the UCSC browser, I think it would be a very valuable addition. Thanks in advance. -Ben The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
