Hi Ben, I'm sorry, but it is currently not possible to get multiple PDF/PSs from our browser. We appreciate your suggestion for this feature and will pass this request on to our developers.
Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 7/6/11 1:50 PM, Wittner, Ben, Ph.D. wrote: > Hello, > > I have a list of genomic ranges. > > For example: > chr2:98,494,001-98,515,000 > chr1:155,260,001-155,274,000 > ... > > In an automated fashion I would like to enter each range into the > "position/search" box of the UCSC Genome Browser and then (also in an > automated > fashion) click the "PDF/PS" button on the Genome Browser and save the current > browser graphic in a PDF file (which I would like to be able to name in an > automated fashion). > > Does anyone have any suggestions? > > This can be done with the Broad Institute's IGV as follows. My program > creates a > text file like the following: > > snapshotDirectory c:\temp > goto chr2:98,494,001-98,515,000 > snapshot rgn001.png > goto chr1:155,260,001-155,274,000 > snapshot rgn002.png > ... > > Then, from IGV I choose file->Run Batch Script... and the plots are created. > > I would like to do the same with the UCSC Genome Browser because it has so > many > more tracks of interest readily available. > > If this feature does not exist for the UCSC browser, I think it would be a > very > valuable addition. > > Thanks in advance. > > -Ben > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
