Hi Vanessa, Thanks for the infos. I will inform our local admins to upgrade our mirror to the latest as well, when the fixed version is released.
Bests, D. On 8/7/11 12:04 AM, Vanessa Kirkup Swing wrote: > Hi Duke, > > This error that you are seeing is possibly from the fact that display > code wasn't able to handle the lack of query sequence. That has been > fixed in the latest code and will go out in the next tri-weekly > release which which is announced on our genome-mirror mailing list > (https://lists.soe.ucsc.edu/mailman/listinfo/genome-mirror) if you > would like to be notified. Along with release announcements, there is > some traffic on this mailing list that is very specific to > administering a local installation. > > Also, for large data sets we highly recommend using the bigBed format: > > http://genome.ucsc.edu/goldenPath/help/bigBed.html > > > Sorry for the inconvenience. If you have further questions, please > contact the mailing list: [email protected]. > > Vanessa Kirkup Swing > UCSC Genome Bioinformatics Group > > > ---------- Forwarded message ---------- > From: Duke<[email protected]> > Date: Thu, Aug 4, 2011 at 10:28 AM > Subject: [Genome] BAM not support zero size block? > To: "[email protected]"<[email protected]> > > > Hi, > > Please correct me if I am wrong. I have some insertion/deletion bed > output from TopHat, and uploading these files to UCSC Genome Browser was > fine. Then I tried to convert to BAM format (using bedToBam in BEDTools > package) and put the link on the browser. I got error: > > baseColorDrawSetup: -: mRNA size (0) != psl qSize (2) > > Does that mean BAM does not support 0-size blocks? If not, then please > explain to me why I had the above error. > > Thanks > > D. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
