Hello, You can use the ENCODE Controlled Vocabulary for Cells:
http://genome.ucsc.edu/ENCODE/cellTypes.html to find the cells that have Nervous system origin to select cells for use on the transcription factor chip. You could also use the advanced tab of track search (click on the "track search" button from the main gateway or under the main browser display) to find chip seq data for the cell lines once you have narrowed your search. Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 08/12/11 05:12, Rajendra kumar chauhan wrote: > Hi, > > I would like to know about the Chip seq data in the regulation track of > Encode data in Hg 18 version . > > I am interested in finding the TFBS from the CHIP seq data,But > unfortunately,I have some problems with the approach to be followed. > > 1.) I would like to know,How do we get the the regions of more that 100bp > for the TFBS,while we look for the TFBS from the Chip seq data. > > 2.) I would like to know about the cell line or the data,which I can use for > my experiments,But looking at the vast data of Chip seq,I am not able to > decide,The gene of my intrest expresses in Neuronal cells,I mean Nervous > system. > > So, How do I decide about the cell line data or tissue data to be used > for,from The UCSC browser. > > Could you please help witht the proper explanation,I have read the whole > list of the Cell lines,etc,But I am confused. > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
