Hi Hyunjung, We suggest you use the table browser (http://genome.ucsc.edu/cgi-bin/hgTables) and then you can send the data that you get from the table browser to GREAT. GREAT can assign genes to genomic regions.
If you are new to the table browser, please see the User's Guide (http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html) and the Open Helix Tutorials (http://www.openhelix.com/cgi/tutorialInfo.cgi?id=28). If you have further questions, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: hyunjung kang <[email protected]> Date: Wed, Sep 14, 2011 at 11:11 PM Subject: [Genome] Where can I find the relationship between TF and TF target genes? To: [email protected] Dear ucsc, Hello, I am trying to use TRANSFAC data in ucsc. So, I downloaded the "tfbsConsFactors" and "tfbsConsSites". I want to find the relationship between TF and TF target genes. However these files have relationship between TF and chromosomal location of TF target. Where can I find the relationship between TF and TF target genes? Regards, Hyunjung. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
